Bioinformatics Visualization Plots | GeneSpectrum

Bioinformatics Visualization Plots

Collection of specialized plotting tools for bioinformatics data visualization. Each repository includes example output images.

Visualization Plot Libraries

Specialized plotting tools for different types of bioinformatics data visualization needs.

Network Plot Example
R

Network Plot

Network Visualization

Generate interactive network plots for protein-protein interactions, gene co-expression networks, and biological pathway visualizations.

igraph, tidygraph, ggraph, ggplot2
Waterfall Plot Example
R

Waterfall Plot

Oncology

Create waterfall plots for oncology data visualization, showing treatment responses and mutation burdens across patient cohorts.

BiocManager, maftools
Venn Diagram Example
R

Venn Diagram

Set Analysis

Generate Venn and Euler diagrams for set analysis in genomics, showing overlaps between gene lists, pathways, or experimental conditions.

ggvenn, dplyr, tidyverse
UpSet Plot Example
R

UpSet Plot

Set Visualization

Create UpSet plots for visualizing set intersections, particularly useful for comparing multiple gene sets or experimental conditions.

UpSetR, ggplot2
Circos Plot Example
R

Circos Plot

Genomics

Generate Circos plots for genomic data visualization, showing relationships between genomic elements, translocations, and structural variations.

circlize, ggplot2
Sankey Plot Example
R

Sankey Plot

Flow Visualization

Create interactive Sankey diagrams for visualizing flow of materials, energy, or information in biological systems and metabolic pathways.

phyloseq, dplyr, tidyr, ggalluvial, networkD3, ggplot2, tibble, RColorBrewer
PhenoGram Example
R

PhenoGram

GWAS

Create PhenoGram plots for genome-wide association study (GWAS) results visualization, showing chromosomal positions of significant SNPs.

karyoploteR, GenomicRanges, readr
Heatmap Example
R

Heatmap

Gene Expression

Generate customizable heatmaps for gene expression data with clustering, annotation tracks, and interactive visualization options.

DESeq2, pheatmap, dplyr, biomaRt
Forest Plot Example
R

Forest Plot

Meta-analysis

Create forest plots for meta-analysis results, showing effect sizes, confidence intervals, and heterogeneity across multiple studies.

dplyr, ggplot2
Correlation Plot Example
R

Correlation Plot

Statistics

Generate correlation matrices and plots for gene expression data, showing relationships between variables with statistical significance.

corrplot
Fish Plot Example
R

Fish Plot

Clonal Evolution

Create fish plots for visualizing clonal evolution in cancer, showing changes in clone sizes over time or treatment.

fishplot, devtools
Lollipop Plot Example
R

Lollipop Plot

Mutation Analysis

Create lollipop plots for visualizing protein mutations and their positions, commonly used in cancer genomics and variant analysis.

maftools
Rainfall Plot Example
R

Rainfall Plot

Mutational Patterns

Generate rainfall plots to visualize mutation density across genomic coordinates, identifying kataegis and mutational hotspots.

maftools, BiocManager
Kaplan-Meier Curve Example
R

Kaplan-Meier Curve

Survival Analysis

Create Kaplan-Meier survival curves for time-to-event data analysis, commonly used in clinical studies and oncology research.

TCGAbiolinks, SummarizedExperiment, DESeq2, dplyr, tibble, tidyr, survival,survminer
Ridge Plot Example
R

Ridge Plot

Distribution Comparison

Generate ridge plots (joyplots) for comparing distributions of gene expression, mutation frequencies, or other continuous variables across groups.

ggridges, ggplot2, ggridges

Need Custom Visualization Solutions?

Our team can develop custom plotting tools tailored to your specific bioinformatics data visualization needs.